Accepted works for LNBI:

Full Papers:

• Identifying Significant Features in HIV Sequence to Predict Patients' Response to Therapies

Samuel Oliveira (Universidade Federal de Ouro Preto), Luiz Henrique Merschmann (Universidade Federal de Ouro Preto), Leoneide Bouillet (UFOP)

• Hierarchical Multilabel Protein Function Prediction Using Local Neural Networks

Ricardo Cerri (Universidade de São Paulo - ICMC/USP), Andréonce de Leon F de Carvalho (ICMC-USP/S.Carlos)

• Analysis and Implementation of Sorting by Transpositions using Permutation Trees

Marcelo Lopes (UFRJ), Marilia Braga (INMETRO), Celina Figueiredo (UFRJ), Rodrigo Hausen (USP), Luis Kowada (Universidade Federal Fluminense)

• MicroRNA or Not MicroRNA?

David Langenberger (Uni Leipzig), Sebastian Bartschat (Uni Leipzig), Jana Hertel (Uni Leipzig), Steve Hoffmann (Uni Leipzig), Hakim Tafer (UniLeipzig), Peter Stadler (University of Leipzig)

• Gene Prediction by Multiple Spliced Alignment

Rodrigo Kishi (Universidade Federal de Mato Grosso do Sul), Ronaldo Santos (Universidade Federal de Mato Grosso do Sul), Said Adi (Faculdade de Computação (UFMS))

• Improved gene expression clustering with the parameter-free PKNNG metric

Ariel Baya (CIFASIS - Conicet/UNR/UPCM), Pablo Granitto (CIFASIS - Conicet/UNR/UPCM)

• Efficiently Querying Protein Sequences with the Proteinus Index

Felipe Alves da Louza (Universidade de São Paulo), Ricardo Ciferri (Universidade Federal de São Carlos), Cristina Ciferri (USP)

• A New Algorithm for Sparse Suffix Trees

Gustavo Sacomoto (Université Lyon 1), Alair Pereira do Lago (Universidade de São Paulo)

Extended Abstracts:

• A Conceptual Many Tasks Computing Architecture to Execute Molecular Docking Simulations of a Fully-Flexible Receptor Model

Renata De Paris (Pontifícia Universidade Católica do Rio Grande do Sul), Fábio Frantz (PUCRS), Osmar Norberto de Souza (Pontifícia Universidade Católica do Rio Grande do Sul - PUCRS), Duncan Ruiz (PUCRS)

• kGC: Finding Groups Of Homologous Genes Across Multiple Genomes

Guilherme Telles (Unicamp), Nalvo Almeida Jr (Universidade Federal de Mato Grosso do Sul (UFMS)), Marcelo Brigido (Universidade de Brasília), Paulo Alvarez (UnB), Maria Emilia Walter (University of Brasilia (UnB))

• SciPhy: A Cloud-based Scientific Workflow for Phylogenetic Analysis of Drug Targets in Protozoan

Kary Ocaña (Programa de Engenharia de Sistemas e Computação COPPE / UFRJ), Daniel de Oliveira (COPPE/UFRJ), Eduardo Ogasawara (CEFET-RJ), Alberto Dávila (Fiocruz), Alexandre Lima (Universidade Federal do Rio de Janeiro), Marta Mattoso (COPPE/UFRJ)

Accepted works for BSB Digital Proceedings:

Full Papers:

• Comparing Correlation Coefficients as Dissimilarity Measures for Cancer Classification in Gene Expression Data

Pablo Jaskowiak (University of São Paulo), Ricardo Campello (SCC / ICMC / USP)

• Constraint Logic Programming Models for Reversal and Transposition Distance Problem

Victor Iizuka (UNICAMP), Zanoni Dias (University of Campinas)

• On the Distribution of Rearrangement Distances

Gustavo Galvão (University of Campinas), Zanoni Dias (University of Campinas)

• A Flexible Framework for Computing Rearrangement Distance of Every Permutation in the Symmetric Group

Gustavo Galvão (University of Campinas), Zanoni Dias (University of Campinas)

• Paired Segments Alignment and its Application to the Gene Prediction Task

Ronaldo Santos (Universidade Federal de Mato Grosso do Sul), Rodrigo Kishi (Universidade Federal de Mato Grosso do Sul,), Said Adi (Faculdade de Computação (UFMS))

• Reducing the number of attributes in a non-coding identifier based on Support Vector Machine

Tulio Silva (University of Brasilia), Maria Emilia Walter (University of Brasilia (UnB)), Pedro de Azevedo Berger (UNB), Marcelo Brigido (Universidade de Brasília), Victor Taira (UnB)

• A Structured-Population Genetic Algorithm for the 3-D Protein Structure Prediction Problem

William Gonçalves (Federal University of Rio Grande do Sul), Marcio Dorn (Universidade Federal do Rio Grande do Sul), Luciana Buriol (Universidade Federal do Rio Grande do Sul), Luis Cunha Lamb (UFRGS)

Extended Abstracts:

• A Conceptual Model for a Hight-Throughput Sequencing Pipeline

Ruben Cruz Huacarpuma (University of Brasilia), Maristela Holanda (University of Brasilia), Maria Emilia Walter (University of Brasilia (UnB))

• Two new whole-genome distance measures

Ulisses Dias (Universidade Estadual de Campinas), Zanoni Dias (University of Campinas), Joao Setubal (Virginia Tech)

• ALGAe: A test-bench environment for a Genetic Algorithm-based Multiple Sequence Aligner

Sergio Ordine (University of Campinas), Alex Grilo (University of Campinas), Zanoni Dias (University of Campinas), André Almeida (State University of Campinas)